Preheat the oven to 350 F.
Slice the top off of each roll and remove the bread inside, leaving just the crusty shell. Be sure to leave enoough bread at the bottom of the roll so the mixture does not leak out.
In a medium-size bowl, whisk eggs, milk, herbs, salt, and pepper together until eggs are fluffy.
Stir in pepperoni and tomatoes.
Place rolls on a baking sheet, and evenly distribute egg mixture between each roll.
Sprinkle each bread bowl with cheese.
Bake for 20-22 minutes, or until eggs are set and bread is toasted.